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...tttttcaaaccacaaacatagccttatatttttaagtaaatgtggatagaaatgagattaatgtcttatttttttattttaatatttttgatttttgcagTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGTCCTCACAAATCTTGACAAGAGATGGCTTTGCCTGAGATCTTTTATTGT
species | Glycine max |
transcript | GLYMA08G09880.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTG TTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGEST: gi|192321309|gb|FK012070.1|FK012070
genomic: TGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTGgtaagagttc ... atttttgcagTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTG
EST: TGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTG TTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGEST: gi|192321715|gb|FK013597.1|FK013597
genomic: TGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTGgtaagagttc ... atttttgcagTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTG
EST: TGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTG TTTTGGGAAGCCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTG
genomic: TGATCCAGACTTTGATACTGCTTCTAGCTTGCAAAAGCAATGGTACAGTGgtaagagttc ... atttttgcagTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTG
atagaaatgagattaatgtcttatttttttattttaatatttttgatttttgcagTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGTCCTCACAAATCTTGACAAGAGATGGCTTTGCCTGAGATCTTTTATTGT
tttttgc CT-rich tract
attaatgtcttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttcaaaccacaaacatagccttatatttttaagtaaatgtggatagaaatgagattaatgtcttatttttttattttaatatttttgatttttgcagTTTTGGGAAACCACGACTATAGGGGTAATGTTGAGGCACAGCTGAGTCCTGTCCTCACAAATCTTGACAAGAGATGGCTTTGCCTGAGATCTTTTATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC