1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tccatttatattttttttagttgctacactcattcattgaggtttagctgaagtgccaatgcacttcatataaattgtgttgcttccatgtggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG
species | Glycine max |
transcript | GLYMA08G09180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|193665926|gb|FK611313.1|FK611313
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: GACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|21677711|gb|BQ630062.1|BQ630062
genomic: GACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|192311655|gb|FK004874.1|FK004874
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|298190692|gb|HO032813.1|HO032813
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GCTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|209712035|gb|BW674180.1|BW674180
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|192311684|gb|FK004875.1|FK004875
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|24205274|gb|BU964527.1|BU964527
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|7587871|gb|AW703678.1|AW703678
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|37996739|gb|CF808328.1|CF808328
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|298163506|gb|HO012239.1|HO012239
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: TGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|16996758|gb|BM086130.1|BM086130
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|208159325|gb|GD955242.1|GD955242
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|8285675|gb|BE023234.1|BE023234
genomic: CAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACEST: gi|6566797|gb|AW234429.1|AW234429
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
EST: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATG GTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
genomic: CGATGTGCACTCAAAGTCAGACAAAAGTCCTGTCACAGTGGCTGATTATGgttagtttta ... tggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAAC
agctgaagtgccaatgcacttcatataaattgtgttgcttccatgtggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG
acttcatataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatttatattttttttagttgctacactcattcattgaggtttagctgaagtgccaatgcacttcatataaattgtgttgcttccatgtggtttacagGTTCACAAGCATTGGTCAGCTTTATACTTGAGAGAGAACTTCCTTCTGAACCATTTTCATTAGTAGCTGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
-ccattta
- - - - - - - - - -gttgcta
- - - - - - - - - - - - - cactcat
- - - - - - - - - - - - - - - - - - - - - - - gctgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgcac