Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttatttccttccgatccaattccatctcttcttctccgccacgaaattcgcctccgattcgagctcggagcttcagattcgcgattcgacttcattgcatttttcgttttcagattgttttgacctcgtagcacgtgatttttgcttctgttttttttttttgtttaattattctgttccgttttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCTCAAG

Basic information

species Glycine max
transcript GLYMA08G09170.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10235209|gb|BE804156.1|BE804156
EST:     GGAACGCGAGTTTCTCGTCAAGGACATTGAG                         AGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCT
genomic: GGAACGCGAGTTTCTCGTCAAGGACATTGAGgtaattttat ... cgttttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatttttgcttctgttttttttttttgtttaattattctgttccgttttgcagAGTTTAGATCTTTCGAGAATTGACCGGATTATTCGATGCTCGCTGCGATCTCAAG
                            gtttaat  putative branch site (score: 4)
                                     ttctgttccgtttt  putative PPT
     ttttgcttctgttttt  TA-rich tract