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gtaagagtagtgaatactctataaacagctctgttaacttatttgttttgaatttatgcttgatgaatccttgttacatttgcagtgagGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG
species | Glycine max |
transcript | GLYMA08G07670.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT-TGA GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAEST: gi|163926925|gb|EH038506.1|EH038506
genomic: ACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAAgtaagagtag ... ttgcagtgagGG-CTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCA
EST: CAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATTG-AG GGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAGEST: gi|192307419|gb|FK000761.1|FK000761
genomic: CAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGA-TGTAAgtaagagtag ... ttgcagtgagGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG
EST: ACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGAT-TGA GGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG
genomic: ACAACGCAGAAGGTTTTCCATTTGATGAATTTTGTTGTCAATGGATGTAAgtaagagtag ... ttgcagtgagGG-CTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG
taacttatttgttttgaatttatgcttgatgaatccttgttacatttgcagtgagGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG
tatttgttttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtagtgaatactctataaacagctctgttaacttatttgttttgaatttatgcttgatgaatccttgttacatttgcagtgagGGCTGTCCTTTTCGGTTTTTACAGAAGTGTTTTTGCAATTAGACCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT