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...acctgttcctctataaggaaaaccctgaacttattctgcctaccacctgtttaaatgttttctgtcttgtgctattttcatagttaaatggttcctgcagGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGA
species | Glycine max |
transcript | GLYMA08G06860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTEST: gi|213613523|gb|DB963253.1|DB963253
genomic: TTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGGgtagtgcatt ... gttcctgcagGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATT
EST: TTGTGGGGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATTTEST: gi|9259490|gb|BE347645.1|BE347645
genomic: TTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGGgtagtgcatt ... gttcctgcagGCAGTTCATGTTGCTGCACAATTT
EST: TTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTEST: gi|213606776|gb|DB961015.1|DB961015
genomic: TTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGGgtagtgcatt ... gttcctgcagGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATT
EST: TTGTGGGGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATT
genomic: TTGTGGAGAACGGTGCTCGGGTCGAAGCTGCAGATGTAAATGGATACCGGgtagtgcatt ... gttcctgcagGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATT
cctgtttaaatgttttctgtcttgtgctattttcatagttaaatggttcctgcagGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGA
ttcctgc CT-rich tract
tattttcatagttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgttcctctataaggaaaaccctgaacttattctgcctaccacctgtttaaatgttttctgtcttgtgctattttcatagttaaatggttcctgcagGCAGTTCATGTTGCTGCACAATTTGGACAGACAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- ctgttcc
- - - - - - - aaggaaaa
- - - - - - - - - - - ccctgaa
- - - - - - - - - - - - - - - - attctgc
- - - - - - - - - - - - - - - - - - - -ctaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt