1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgcctccccattcatttttttaacattatattttatcattctgcgttgataaaaacaaatgaatttagggatttccggttattgttgctcacaccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATGACATTGTAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAAC
species | Glycine max |
transcript | GLYMA08G06010.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|21888905|gb|BQ742118.1|BQ742118
genomic: CCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|308222667|gb|HO760642.1|HO760642
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|12773394|gb|BG238321.1|BG238321
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|254343946|gb|GR857702.1|GR857702
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|192299227|gb|FG990710.1|FG990710
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAGGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|254315121|gb|GR830114.1|GR830114
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|254324847|gb|GR834272.1|GR834272
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|298196303|gb|HO044694.1|HO044694
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATEST: gi|18730076|gb|BM525667.1|BM525667
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
EST: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACG GAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
genomic: CCTCGGTGCTCGCATCCCTCCCCAACCCAAAACGgtgtgcctcc ... ccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAAT
ataaaaacaaatgaatttagggatttccggttattgttgctcacaccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATGACATTGTAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAAC
tgctcac putative branch site (score: 2)
aacaaatgaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcctccccattcatttttttaacattatattttatcattctgcgttgataaaaacaaatgaatttagggatttccggttattgttgctcacaccatatgcagGAACCAGGTGATTTTGATGACAAGTCAGATCCTCCTTTATCCGCACAAAATGACATTGTAGAATCTGATATAGAGTTGGATAATGCTGATGTTGTTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT