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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agattcatctttctacgaatattgttagcgatggtaaaaaaggaacatgaaatgctttaatctccccttttcacaattgtgtattttgtttttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCG

Basic information

species Glycine max
transcript GLYMA08G05390.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208267696|gb|GE066801.1|GE066801
EST:     AATGCAAGGGATTCCGCCAGATATCTTGGCTGCTCATTACGGTGAAGAAG                         AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
EST: gi|16996888|gb|BM086260.1|BM086260
EST:     AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAG                         AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
EST: gi|193476843|gb|FK439046.1|FK439046
EST:     AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAG                         AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
EST: gi|254345519|gb|GR851681.1|GR851681
EST:     AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAG                         AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgaaatgctttaatctccccttttcacaattgtgtattttgtttttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCG
                                            ttttaat  putative branch site (score: 3)
                                      ttttgttttt  CT-rich tract
                             aattgtgtattttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agattcatctttctacgaatattgttagcgatggtaaaaaaggaacatgaaatgctttaatctccccttttcacaattgtgtattttgtttttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA