1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agattcatctttctacgaatattgttagcgatggtaaaaaaggaacatgaaatgctttaatctccccttttcacaattgtgtattttgtttttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCG
species | Glycine max |
transcript | GLYMA08G05390.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATGCAAGGGATTCCGCCAGATATCTTGGCTGCTCATTACGGTGAAGAAG AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCEST: gi|16996888|gb|BM086260.1|BM086260
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAG AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCEST: gi|193476843|gb|FK439046.1|FK439046
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAG AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCEST: gi|254345519|gb|GR851681.1|GR851681
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
EST: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAG AGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
genomic: AATGCAAGGGATTCCACCAGATATCTTGGCTGCTCATTACGGTGAAGAAGgtaatcttgt ... tttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGC
catgaaatgctttaatctccccttttcacaattgtgtattttgtttttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCG
ttttaat putative branch site (score: 3)
ttttgttttt CT-rich tract
aattgtgtattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agattcatctttctacgaatattgttagcgatggtaaaaaaggaacatgaaatgctttaatctccccttttcacaattgtgtattttgtttttaatccagAGGATGATGTTCCGTCAAAGGCAGCCAAGGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTCCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - -catgaaa