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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctttatgttttctttctatttttttattttatgaaattcaattgtttaaagttcttctgtttattaatttgttgttgtctgatcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCT

Basic information

species Glycine max
transcript GLYMA08G05280.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G05280.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------gtacctttatgttttctttctatttttttattttatgaaattcaattgtttaaagttcttctgtttattaatttgttgttgtctg---atcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCT
                          |  ||| |   ||| ||  |||| |||| | || ||   | || || | |    |   |||   || | ||   |||||  |     ||||||||||| ||||| || |||||  |||||||||| ||| | || |||||||| || ||||||||||| |||||||||||| | | ||| || || |     
gtagattccccctttttgtttattgttctcttcaaagtttgttgttattatttt-tcttttgtgttccatttttctctcatcaatcttgataatgatgccttgttaaccatctatcagCGTGTTCATGGGGCCCACTGAAATTCCTTCTCAATCCTCTGAAACTATTAAAATCCCAACTGCTCATTATGAGTTTGGCGCTAACTTTATAGACCCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaattcaattgtttaaagttcttctgtttattaatttgttgttgtctgatcagCGTGTTGATGGGACCTACTGAGGTTCCTTCTCAGTCCACGGAGACTATTAAGATTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCT
                              tattaat  putative branch site (score: 2)
                            tttattaatttgttgt  TA-rich tract