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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcaatgtttttttctgtgttgtttgatagaatgcttgaacatattttagtctataaaggttctgttggtattctgctgtttgtaggttcaacttgtatctgaaaactaatcctgattttcctcgttcacagATTTTGGCTTCCTGATACATGGTGTCGGAGATCAGGAGTTGTATGGTAGTGCACAAGTGCGGCGACCTATATATATAGCGGATCAATTATTTCTTTTATG

Basic information

species Glycine max
transcript GLYMA08G05220.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214009702|gb|DB986885.1|DB986885
EST:     CTAGAATCCATGTGAGTCTGCTCTCATTTATATGTTGAGATGCTAAATAT                         ATTTTGGCTTCCTGATACATGGTGTCGGAGATCAGGAGTTGTATGGTAGTG
genomic: CTAGAATCCATGTGAGTCTGCTCTCATTTATATGTTGAGATGCTAAATATgtatggcaat ... tcgttcacagATTTTGGCTTCCTGATACATGGTGTCGGAGATCAGGAGTTGTATGGTAGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgtaggttcaacttgtatctgaaaactaatcctgattttcctcgttcacagATTTTGGCTTCCTGATACATGGTGTCGGAGATCAGGAGTTGTATGGTAGTGCACAAGTGCGGCGACCTATATATATAGCGGATCAATTATTTCTTTTATG
                                 tcctgattttcctc  CT-rich tract
 aaaactaat  TA-rich tract