1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...caacatgtcttttcagaaactgtttttccttccacttgtttccttttcatgtttcaattatgctgtggggtactgagaactgttccttccattcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTATTCAG
species | Glycine max |
transcript | GLYMA08G04890.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAACTTTGCTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTAEST: gi|14259175|gb|BG882083.1|BG882083
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgatcct ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: CAATGCATTAACTGTGNGAAAAAGTTAGAG GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTAEST: gi|21675862|gb|BQ628213.1|BQ628213
genomic: CAATGCATTAACTGTG-GAAAAAGTTAGAGgtacgatcct ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTAEST: gi|12773224|gb|BG238151.1|BG238151
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgatcct ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTAEST: gi|254323080|gb|GR839993.1|GR839993
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgatcct ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTAEST: gi|9204230|gb|BE330454.1|BE330454
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgatcct ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
EST: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAG GTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
genomic: TAACTTTGTTCAGTCAACATTCAATGCATTAACTGTGGAAAAAGTTAGAGgtacgatcct ... attcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTA
ttcatgtttcaattatgctgtggggtactgagaactgttccttccattcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTATTCAG
ctgttccttccattct CT-rich tract
tttcaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caacatgtcttttcagaaactgtttttccttccacttgtttccttttcatgtttcaattatgctgtggggtactgagaactgttccttccattcttgtagGTGCAACGCTAGTTGTATCTGGTGATGGTCGTTATTTTTCAAAGGAAGCTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- acatgtc
- - - - - - - - - - - - - tccttcc
- - - - - - - - - - - - - -ccttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgag