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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactgaggcattgagggaaataaataatttattaatcttttaatgcaaagcgcgtttctagcttaaatagattaaaaattagcttcttttgcagatattctgttttcgatttgaggttatttggtttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG

Basic information

species Glycine max
transcript GLYMA08G04460.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G04460.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G047564_T03 (Zea mays), 3'ss of exon 2
gtatgactgaggcattgagggaaataaataatttattaatcttttaatgcaaagcgcgtttctagcttaaatagattaaaaattagcttcttttgcagata-ttctgttttcgatttgaggttatttggtttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG
                                            | || |  |      || |  |||||    ||      ||| ||| ||  |||   | |   |    || |     |   |||  |||  |     | ||  | | ||| | |   |  |||  ||| ||||||||| ||||||||||| |||||||  |  ||||||||||| |||||||| || ||  | ||||| |||
-------------------------------------------gtgattcttaattttcttttttcttaagggtat-----gttaacttgttaagcaatcaatgtcgaacacggtgatctgccttttcatttccggagcattggagatgctttcaaa--tatgattcatggacaatgcagGGATGGATATTAAGGGGGTTGCCGTGGAAATACAAAAAGACAAAAAAACACCACTTGTGCAAAAG

upper sequence: GLYMA08G04460.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv11s0016g04290.t01 (Vitis vinifera), 3'ss of exon 2
---------------gtatgactgaggcattgagggaaataaataatttattaatcttttaatgcaaagcgcgtttctagcttaa-atagattaaaaattagcttcttttgcagatattctgttttcga---tttgaggt--tatttggt--ttttgagtgctaggtaaggttttgagagtcaccattggtggtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAG
                ||  |||      ||        |||||||| | || || | ||||     |     ||| | | |||  ||    |  || ||   || |||   |  || | | ||    |   |||| |||  | ||| ||  || |||||| |||||||| ||||||| |  |||||| ||||  |||||||| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | |||||||||
gtaacatgaagaaaaatagaactcctctgttttccctgttaaataatgttttcatgtattaa-atgtactttttttgttgtttagcatgagcttcaattttttttttttaaaatctaattttttaaaaaaattttggggtaatgttttgtaattctgagtgttaggtaagattttgaggga-accatttgtggaaaatgcagGAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207802272|gb|GD773054.1|GD773054
EST:     GTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTTGCGCTG                         GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGA
genomic: GTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTT-GCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGA
EST: gi|7924914|gb|AW830940.1|AW830940
EST:     GGTCAAATGCGTACTGGTTGATAGTAGCTCGCCTCGTGCCTTTTGCGCTG                         GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: gi|13562624|gb|BG550844.1|BG550844
EST:     GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTG                         GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: gi|209704856|gb|BW673467.1|BW673467
EST:     GTCAAATGCGTACTGGTTGATAGTAGCTCGCCTC-ATGCCTTTTGCGCTG                         GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
genomic: GTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGA-GCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: gi|298170101|gb|HO018725.1|HO018725
EST:     GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTG                         GTATGGATATTAAAGGGGTTGTCGCTGAAATACAAAAGGACAAAAACACTC
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
EST: gi|209726516|gb|BW658083.1|BW658083
EST:     GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTG                         GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC
genomic: GGTCAAATGCGTACTGGTTGATAGCAGCTCGCCTCGAGCCTTTTGCGCTGgtatgactga ... gtcaatgcagGTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTC