1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtgtgttatgggaaaatctatcaaagtattaagcctgcctacactttgatatatgtttgttatgttgttacagGCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAACCTGAAGGTTTTCATCCTCCCCCTGGAAGACAAAGAGAACTGGGTTTTA
species | Glycine max |
transcript | GLYMA08G03730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGAAGAAGTTTCAATTCCTCCAAATTTGATGACTGGCTCTTCAGAT GCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAAEST: gi|21676721|gb|BQ629072.1|BQ629072
genomic: AGTTTGAAGAAGTTTCAATTCCTCCAAATTTGATGACTGGCTCTTCAGATgtaagtgtgt ... gttgttacagGCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAA
EST: AGTTTGAAGAAGTTTCAATTCCTCCAAATTTGATGACTGGCTCTTCAGAA GCATTGTTTGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAAEST: gi|120533561|gb|EH261694.1|EH261694
genomic: AGTTTGAAGAAGTTTCAATTCCTCCAAATTTGATGACTGGCTCTTCAGATgtaagtgtgt ... gttgttacagGCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAA
EST: AGTTTGAAGAAGTTTCAATTCCTCCAAATTTGATGACTGGCTCTTCAGAT GCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAA
genomic: AGTTTGAAGAAGTTTCAATTCCTCCAAATTTGATGACTGGCTCTTCAGATgtaagtgtgt ... gttgttacagGCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAA
tatcaaagtattaagcctgcctacactttgatatatgtttgttatgttgttacagGCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAACCTGAAGGTTTTCATCCTCCCCCTGGAAGACAAAGAGAACTGGGTTTTA
ctttgat putative branch site (score: 5)
atatatgtttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtgttatgggaaaatctatcaaagtattaagcctgcctacactttgatatatgtttgttatgttgttacagGCATTGTTCGATTTTATAGCAGCAGCTCTTGCAAAGTTTGTTGGTTCAGAACCTGAAGGTTTTCATCCTCCCCCTGGAAGACAAAGAGAACTGGGTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA