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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgctctctctctctctctctctctctcacacacacacacaatcctacttgatttcgttcttgattaatcgtggttttgttgttttgaattgttgtataattgttaggcgagaatcgtaattggggttttattgaaattttgtttgttatttatagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAATGAGCCCTACGAAACCT

Basic information

species Glycine max
transcript GLYMA08G03600.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9564058|gb|BE473567.1|BE473567
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttgctct ... ttatttatagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|6455181|gb|AW185864.1|AW185864
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttgctct ... ttatttatagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|7589646|gb|AW705416.1|AW705416
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttgctct ... ttatttatagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
EST: gi|213598064|gb|DB972252.1|DB972252
EST:     TTCGTAACAAGATTGAAGCTGAGTTCAGGTGCTGGGATCAAATTGACGAG                         TTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG
genomic: TTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGgttttgctct ... ttatttatagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttaggcgagaatcgtaattggggttttattgaaattttgtttgttatttatagTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAATGAGCCCTACGAAACCT
                         ttttattgaaattttg  TA-rich tract