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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatgaattgttgcttatgtttgcaaaaagtttaaaatttaaatattattataatgaccacatttttttctggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAGACTCCGATAAGTTTTGGGGCTACACATCTGCTAGAACGAATGGCTTTCA

Basic information

species Glycine max
transcript GLYMA08G03580.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847705|gb|BF070345.1|BF070345
EST:     CTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
genomic: CTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
EST: gi|19270640|gb|BM886896.1|BM886896
EST:     TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
genomic: TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
EST: gi|5666651|gb|AI930687.1|AI930687
EST:     TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
genomic: TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
EST: gi|213597955|gb|DB958336.1|DB958336
EST:     TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
genomic: TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
EST: gi|15813010|gb|BI785285.1|BI785285
EST:     TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
genomic: TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
EST: gi|254330474|gb|GR841739.1|GR841739
EST:     TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
genomic: TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG
EST: gi|14259216|gb|BG882124.1|BG882124
EST:     TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCG                         ACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACCAG
genomic: TTATTACTACACTCCCAAATGGACTCAAAGTGGCCTCTGAAACATCACCGgtatgaatga ... ggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtttaaaatttaaatattattataatgaccacatttttttctggttcttcagACTCCCACTGCGTCGGTTGGCTTATATGTAGATTGTGGTTCAATATACGAGACTCCGATAAGTTTTGGGGCTACACATCTGCTAGAACGAATGGCTTTCA
                                    tttttttctggttctt  CT-rich tract
     ttaaaatttaaatatt  TA-rich tract