Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtatctgcctgtctgtctctctacatggcgaagtctgttctatgttaatttaattgtaggtgtttcttgctgctacatataactctagaatcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAATTTATGGAAGAACAGGAAAGAGCTAAAGGTTGAAGATGCAGGCATTGCT

Basic information

species Glycine max
transcript GLYMA08G03410.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03410.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G042078_T01 (Zea mays), 3'ss of exon 1
---gtatctgcctgtctgtctctctacatggcgaagtctgttctatgttaatttaattgtaggtgtttcttgctgctacatataactctagaatcttttg--cagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAATTTATGGAAGAACAGGAAAGAGCTAAAGGTTGAAGATGCAGGCATTGCT
    ||   || | |  |     |     | || | | |||    |||       |||   | | || |||         | ||||  | |     ||||  |||  | || |||||  ||||||| || |||||||| ||||||| ||||||| |  |||||||||||||||| || || | ||| || ||    |||||||| 
ttaataatagcat-taggaacagcagttagacgcaatatgtaacttgtg----ccattcaggattttacttttcatggtttctaacctttgttgtgtttgttcagCCTACCAGGTCGCTATGAGTCATTCTGGAAGGAGCTTGATTGTGTCAAGCAGGTATGGAAGAACAGGAAGGACCTCACGGTCGAGGACCTTGGCATTGCG

upper sequence: GLYMA08G03410.1 (Glycine max), 3'ss of exon 2
lower sequence: AC194341.4_FGT002 (Zea mays), 3'ss of exon 1
gtatctgcctgtctgtctctctacatggcgaagtctgttctatgttaatttaattgtaggtgtttcttgctgctacatataactctagaatcttt-tgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAATTTATGGAAGAACAGGAAAGAGCTAAAGGTTGAAGATGCAGGCATTGCT
||   |   | | || | ||   | |||   |  |  |       |  |  ||||   || ||| |||         |  | |  |    | ||| | |||  | || |||||  ||||||| || |||||||| ||||||  ||||||| |  |||||||||||||||| || || |||||||| ||    || ||||| 
gtccgtcattatttgcccctgctcttggtagacgcaatatgtaacttgtgcaatta-gggagttacttttcatggttttaaccattgctgtgtttgttcagCCTACCAGGTCGGTATGAGTCATTCTGGAAGGAGCTTGATGGTGTCAAGCAGGTATGGAAGAACAGGAAGGACCTCAAGGTTGAGGACCTTGGGATTGCG

upper sequence: GLYMA08G03410.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0014g04860.t01 (Vitis vinifera), 3'ss of exon 2
-gtatctgcctgtctgtctctctacatggcgaagtctgttctatgttaatttaattgtaggtgtttcttgctgctacatataact-ctagaatcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAATTTATGGAAGAACAGGAAAGAGCTAAAGGTTGAAGATGCAGGCATTGCT
  ||  |        || | || |      |||    | | |  ||   | |   || |  | |||  || |  |      |  |  |   || |  | |||||| || |||||| |||| || || |||||||| ||||||||||||||| |  | |||||||||||| | || || ||||| || ||||| || ||||||
tatagatcatatgaagtatatcaagcaaaagaaactagcttt--gtctgtctgtatgcacatatttgctgtttttttcctcacttgtttttatttcctacagTATCCCTGGTCGTTATGAATCTTTCTGGAAGGAGCTTGATTATGTCAAGCACATGTGGAAGAACAGGCAGGAACTTAAGGTCGAGGATGCTGGTATTGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298194988|gb|HO043516.1|HO043516
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|21887822|gb|BQ741035.1|BQ741035
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298184829|gb|HO030042.1|HO030042
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298170531|gb|HO019155.1|HO019155
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192308213|gb|FK000849.1|FK000849
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298167660|gb|HO012923.1|HO012923
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|31456239|gb|CD398267.1|CD398267
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTCGGAAGGAACTTGATTATGT
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGT
EST: gi|193492921|gb|FK462611.1|FK462611
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298172636|gb|HO019676.1|HO019676
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|207735997|gb|GD709846.1|GD709846
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298169757|gb|HO021117.1|HO021117
EST:     GAGAAATGCAACCTGTTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAATCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298193126|gb|HO033560.1|HO033560
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGGGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|9983405|gb|BE657513.1|BE657513
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298169617|gb|HO020977.1|HO020977
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298170047|gb|HO018671.1|HO018671
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192295279|gb|FG985933.1|FG985933
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|193421702|gb|FK386235.1|FK386235
EST:     AGAAATTGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCGAGAA
genomic: AGAAA-TGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|21594152|gb|BQ610068.1|BQ610068
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|8827251|gb|BE210981.1|BE210981
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|151405342|gb|EV275156.1|EV275156
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGGTTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|151396659|gb|EV266532.1|EV266532
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298170430|gb|HO019054.1|HO019054
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298194973|gb|HO043501.1|HO043501
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|208203779|gb|GE003154.1|GE003154
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTC
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTC
EST: gi|298178320|gb|HO024055.1|HO024055
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298171529|gb|HO016561.1|HO016561
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|21994187|gb|BQ785715.1|BQ785715
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|7589371|gb|AW705146.1|AW705146
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|209706215|gb|BW680906.1|BW680906
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298195986|gb|HO044377.1|HO044377
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|21602133|gb|BQ612464.1|BQ612464
EST:     TAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298180326|gb|HO025527.1|HO025527
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298177215|gb|HO023462.1|HO023462
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|31307501|gb|CD392704.1|CD392704
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|17153517|gb|BM143450.1|BM143450
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|6913995|gb|AW395525.1|AW395525
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298171876|gb|HO021468.1|HO021468
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298197602|gb|HO045081.1|HO045081
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298194852|gb|HO043324.1|HO043324
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|14125177|gb|BG789615.1|BG789615
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|151394795|gb|EV264666.1|EV264666
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298177387|gb|HO027168.1|HO027168
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|151397253|gb|EV267126.1|EV267126
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192325069|gb|FK016180.1|FK016180
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|31462949|gb|CD404977.1|CD404977
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|208259862|gb|GE059304.1|GE059304
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192326897|gb|FK015139.1|FK015139
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|193693594|gb|FK634226.1|FK634226
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCCTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|7028472|gb|AW458255.1|AW458255
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|151404611|gb|EV274425.1|EV274425
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|9440099|gb|BE440610.1|BE440610
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTCGGAAGGAACTTGATTATGT-AACGA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAA-GA
EST: gi|209706214|gb|BW680905.1|BW680905
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|15663418|gb|BI700789.1|BI700789
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|20498210|gb|BQ273140.1|BQ273140
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298185550|gb|HO030763.1|HO030763
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192332241|gb|FK023890.1|FK023890
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|151399311|gb|EV269182.1|EV269182
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192330273|gb|FK019853.1|FK019853
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192309851|gb|FK001395.1|FK001395
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|192300149|gb|FG989271.1|FG989271
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|213620052|gb|DB967437.1|DB967437
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|18718017|gb|BM523018.1|BM523018
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|10846422|gb|BF069319.1|BF069319
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|15662845|gb|BI700216.1|BI700216
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|21601049|gb|BQ611380.1|BQ611380
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|22541827|gb|BU091670.1|BU091670
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|193369213|gb|FK334417.1|FK334417
EST:     AAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTTGGAAGGAACTTGATTATGTCAAGA
genomic: AAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCC-TTTTGGAAGGAACTTGATTATGTCAAGA
EST: gi|38191870|gb|CF921076.1|CF921076
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|9259653|gb|BE347800.1|BE347800
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
EST: gi|298178721|gb|HO024456.1|HO024456
EST:     GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAG                         TATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA
genomic: GAGAAATGCAACCTGCTGGCAAAGCAATTGTTTTACACCCGCCTTGCTAGgttatatttt ... tcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatttaattgtaggtgtttcttgctgctacatataactctagaatcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAATTTATGGAAGAACAGGAAAGAGCTAAAGGTTGAAGATGCAGGCATTGCT
                               atataac  putative branch site (score: 3)
                                             tcttttgc  putative PPT
                            tacatataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatctgcctgtctgtctctctacatggcgaagtctgttctatgttaatttaattgtaggtgtttcttgctgctacatataactctagaatcttttgcagTATTCCGGGTCGTAATGAGTCCTTTTGGAAGGAACTTGATTATGTCAAGAATTTATGGAAGAACAGGAAAGAGCTAAAGGTTGAAGATGCAGGCATTGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- -tctgcct
- - - - - - - - - ctctaca
- - - - - - - - - - - - - - - - gtctgtt