Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccttattttcttattttaattttaatacaatgttttattcctagttgaatttagatgctattacaccaagtagtaatttatttatgaataaagaatgtcgttggtgttgtgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGACAACCGACCGTCATGCCTACAAGGTCGATCCGAGCAATCCCGGTTCCG

Basic information

species Glycine max
transcript GLYMA08G02610.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G02610.1 (Glycine max), 3'ss of exon 2
lower sequence: AT1G64390.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaccttattttct-tattttaattttaatacaatgttttattcctagttgaatttagatgctattacaccaagtagtaatttatttatgaataaag-aatgtcgttggtgttgtgacaatt-agGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGACAACCGACCGTCATGCCTACAAGGTCGATCCGAGCAATCCCGGTTCCG
||    || |  || ||||||||||   | | | | ||| |||  |   |    |||  |  |  |  || ||   | |||| | || |||  |    ||| |  ||  ||   |     || |||| |||||||| ||||| ||||||||||||||||| ||||| || || ||||| || |||||  | || |||| | | |||||||| |||||||| || |
gtttaatactgactatattttaattaataaatactatttaatttattaatactgttaattaatgat-tacaaaactgaaattgagttttgatgattttaatttaatttttgcaatttttttttagGTTGGAGATGGCAACACCGACCATTACTGTTGGCAGAGACCGGAAGAAATGACGACGGACCGGAAAGCTTACAGGATAGATCCGAGTAATCCCGGGTCGG

upper sequence: GLYMA08G02610.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0025g01380.t01 (Vitis vinifera), 3'ss of exon 4
gtaccttattttcttattttaattttaatacaatgttttattcctagttgaatttagatgctattacaccaagtagtaatttatttatgaataaagaatgtcgttggtgttgtgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGACAACCGACCGTCATGCCTACAAGGTCGATCCGAGCAATCCCGGTTCCG
 |  |  |  |  | ||    | |||       | ||| |||     |  ||||   ||| | | |    | |  ||  ||| ||| | | |           ||  | || ||     |||||||||||||| |||||||| || | |||||||||||| |||||||||||||| || || || |  || || ||| ||||||| ||||| || || ||||
atttcccacctattcataaagaattttgggttttctttcatttt---tccaatt---atgtt-taattttatggggttttttttttttaatt-----------tttttattttgg----tagGTGGGAGATGGAAACACTGATCACTTCTGTTGGCAAAGGCCAGAGGACATGACCACAGATCGGCGGGCATATAAGATCGATCCCAGCAACCCAGGGTCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213595559|gb|DB972113.1|DB972113
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: gi|209709618|gb|BW661945.1|BW661945
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: gi|213591044|gb|DB973785.1|DB973785
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGAATGG-AACACTGACCATTACTGTTGGCAA
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGA-TGGGAACACTGACCATTACTGTTGGCAA
EST: gi|209712791|gb|BW681647.1|BW681647
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCCAGAG-ACAT
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACC-AGAGGACAT
EST: gi|14205538|gb|BG839216.1|BG839216
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: gi|213617200|gb|DB963763.1|DB963763
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: gi|209729310|gb|BW660356.1|BW660356
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: gi|209718838|gb|BW669025.1|BW669025
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGC
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGC
EST: gi|213593138|gb|DB966075.1|DB966075
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATG
EST: gi|20449462|gb|BQ253586.1|BQ253586
EST:     CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAG                         GTGGGAGATGGGAAC
genomic: CGGACTACTTCATCAAAGCGCACCCTCAAGCCAATGTTCTCTATGGAGAGgtaccttatt ... tgacaattagGTGGGAGATGGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaagtagtaatttatttatgaataaagaatgtcgttggtgttgtgacaattagGTGGGAGATGGGAACACTGACCATTACTGTTGGCAAAGACCAGAGGACATGACAACCGACCGTCATGCCTACAAGGTCGATCCGAGCAATCCCGGTTCCG
      tagtaatttatttatg  TA-rich tract