1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattgatactatttctgttttcccaagattccaaaatgatttacatagtctgtatgtgtgatatatctgtcgtataatttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAGTGGTAGGTGTGGAGAAAGTAAATGTCCTGAATTTTGCCTTTGCACTGAG
species | Glycine max |
transcript | GLYMA08G01990.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGTGTCTTACCATGTTCGCAAACGAGCTCTCTATGATGATATGTACAAG -TACACATGTTGAGCTGGCTACGTGCCTTGCAGEST: gi|192308244|gb|FK002756.1|FK002756
genomic: GTGTGTCTTACCTTCTTCGCAAACGAGCTCTCTATGATGATATGT-CAAGgtaattgata ... tttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAG
EST: TGTGTGTC-TA-CTT-TTCGCAAACGAGCTCTCTATGATGATATGTCAAG GTACACATGTTGTGCTGGCTACATG-CTTGCAGTGGTAGGTGTGGAGAGAG
genomic: TGTGTGTCTTACCTTCTTCGCAAACGAGCTCTCTATGATGATATGTCAAGgtaattgata ... tttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAGTGGTAGGTGTGGAGAAAG
aaaatgatttacatagtctgtatgtgtgatatatctgtcgtataatttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAGTGGTAGGTGTGGAGAAAGTAAATGTCCTGAATTTTGCCTTTGCACTGAG
tttgttcc CT-rich tract
tataatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgatactatttctgttttcccaagattccaaaatgatttacatagtctgtatgtgtgatatatctgtcgtataatttgttccagGTACACATGTTGTGCTGGCTACATGCCTTGCAGTGGTAGGTGTGGAGAAAGTAAATGTCCTGAATTTTGCCTTTGCACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA