1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaattgcatttaggatctatgtctctctgcttaacttcaaaggtgttgtttcctttgtctcatgttttatttttttcacttgtatgttaatcgtgtgcagGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCC
species | Glycine max |
transcript | GLYMA08G01940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA GTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTEST: gi|298182580|gb|HO031315.1|HO031315
genomic: CAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaattttt ... tcgtgtgcagGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCT
EST: CAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA GTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTEST: gi|192324802|gb|FK016873.1|FK016873
genomic: CAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaattttt ... tcgtgtgcagGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCT
EST: CAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACA GTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCT
genomic: CAACGATGGCATGCAAGAGTTCTTTGTGGAATTCCACGGACCCAAAGACAgtaaattttt ... tcgtgtgcagGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCT
ttgtttcctttgtctcatgttttatttttttcacttgtatgttaatcgtgtgcagGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCC
tgttaat putative branch site (score: 3)
ttttatttttttcact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattgcatttaggatctatgtctctctgcttaacttcaaaggtgttgtttcctttgtctcatgttttatttttttcacttgtatgttaatcgtgtgcagGTCCTTATCAAGGTGGTGTGTGGAAAGTAAGGGTGGATCTACCTGATGCCTATCCTTATAAGTCTCCATCTATTGGCTTTGTCAACAAAATTTTCCATCC
- - tgcattt
- - - - - - - - ctatgtc
- - - - - - - - - - - - ctctgct
- - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt