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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgttaattgttacttcattagtttttgttaacaggagggatcgaatccttgaactatctcttaattgcttaatttattcgtgtggtcggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGTTTGGAACCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGA

Basic information

species Glycine max
transcript GLYMA08G01750.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 2
lower sequence: AT4G23100.3 (Arabidopsis thaliana), 3'ss of exon 2
-------------------------------------------------aaatgttaattgttacttcattagtttttgttaacaggagggat------cgaatcctt--gaactatctcttaattgcttaatttattcgtgtggtcggtct-------------tgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGTTTGGAACCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGA
                                                 || ||| |  | || |||  || ||  |  || || |    | |       |||| | |    | | | | |  ||||   || |  |  || | |      |             | |||||||||||| ||||||||||| |||||||||||| |    || ||||| |||||||||||||| |||||||| ||  | || ||||| || ||||| |||
gtacagtttgatgcttatatgttctgttaaaatgctacttagtgtttgtaattgtgacatatttctttgtttgtgctcttttacggtgttggtattgtttgaattcatccagattgtttgtctattggagaaatattctgttttgctaacttaacattgtgagttttcagAATAGGTACAGAACATGAGAAATTTGGTTTTGAGGTCAATACTTTGCGCCCTATGAAGTATGATCAAATAGCCGAGCTTCTTAATGGTATCGCTGAAAGA

upper sequence: GLYMA08G01750.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv02s0025g03530.t01 (Vitis vinifera), 3'ss of exon 2
---aaatgttaattgttacttcattagtttttgttaacaggagggatcgaatccttgaactatctcttaattgcttaatttattcgtgtggtcggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGTTTGGAACCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGA
      | |  ||||  |    |      ||  ||| |||  |   |   ||          |||  | |||  |||| ||| ||   |||||    || |||||||||||| |||||||||||||||||||| |||||| ||||  | || |||||||  ||||| |||||| | || |||||  ||||  || |||| |||
gttgtttctgtattgaaaaccaagactgcttcattagcagatgatttttcatttccttttcttcttgtgatttattaacttaatcacatggtc---tttccagAATAGGTACAGAACATGAGAAGTTTGGTTTCGAGTTTAGAACTCTACGGCCTATGAGATATGAACAAATATCTGAGTTGCTCTATGGTGTTTCTGAAAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatccttgaactatctcttaattgcttaatttattcgtgtggtcggtcttgcagAATAGGTACTGAACATGAGAAGTTTGGTTTTGAGTTTGGAACCTTGCGTCCTATGAAGTATGACCAAATAGCAGAATTGCTGAATGGCATTGCTGAGAGA
                  ttaattgcttaattta  TA-rich tract