1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagtgaaaattgatgcgactattgagatcttttacatcacaatctttctcattcaccactgtactcccaagtcataataactcttgaaatgtattctcagGTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCTCGTAATGCCCAGCCTCCGCAGCCAGATGACCATCATGGGACTGATAATA
species | Glycine max |
transcript | GLYMA08G01290.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCACACCGGATGGTCAATAATGGCTGTGCTTATGGCTCTCACACTCTTC GTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCTEST: gi|209704509|gb|BW678438.1|BW678438
genomic: ATCACACCGGATGGTCAATAATGGCTGTGCTTATGGCTCTCACACTCTTCgtaagttttt ... gtattctcagGTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCT
EST: ATCACACCGGATGGTCAATAATGGCTGTGCTTATGGCTCTCACACTCTTC GTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCTEST: gi|18723372|gb|BM523464.1|BM523464
genomic: ATCACACCGGATGGTCAATAATGGCTGTGCTTATGGCTCTCACACTCTTCgtaagttttt ... gtattctcagGTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCT
EST: ATCACACCGGATGGTCAATAATGGCTGTGCTTATGGCTCTCACACTCTTC GTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCT
genomic: ATCACACCGGATGGTCAATAATGGCTGTGCTTATGGCTCTCACACTCTTCgtaagttttt ... gtattctcagGTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCT
ttctcattcaccactgtactcccaagtcataataactcttgaaatgtattctcagGTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCTCGTAATGCCCAGCCTCCGCAGCCAGATGACCATCATGGGACTGATAATA
taataac putative branch site (score: 1)
tattctc putative PPT
tcataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtgaaaattgatgcgactattgagatcttttacatcacaatctttctcattcaccactgtactcccaagtcataataactcttgaaatgtattctcagGTTCTGATCACCCTTGTAGTGACCTCTGCAAGAGATCCTGGCATAGTACCTCGTAATGCCCAGCCTCCGCAGCCAGATGACCATCATGGGACTGATAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -ttgatgc
- - - - - - - - - - - - - - - - -acatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcccaa