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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttacttggttcatggaattgaaattgctgtgactgtgaattgaaattcttttgaaattctgttgtaccgattttgtggtttatgatgttttccgtattctaatttcaaaattgaaaatgctttctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG

Basic information

species Glycine max
transcript GLYMA08G00910.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G136296_T02 (Zea mays), 3'ss of exon 2
gtaattttacttggttcatggaattgaaattgctgtgactgtgaattgaaattcttttgaaattctgttgtaccgattttgtggtttatgatgttttccgtattctaatttcaaaattgaaaatgctttctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG
                                                                              | |   | | |  ||  |  |  ||| ||  |||   |    || ||   |   |   | | ||   || || |  ||    || ||| || |      |  |||||| ||| | ||||| || |||||||||||||| |||||||| |||||||||||  ||||||| ||||| ||||||
------------------------------------------------------------------------------tggaactatttactgagtatca-attgtagcttcttgac---aattgacattcttctcatttctctagttttcatttttcgcttgtttattcatggtgct--atagGCTCGTCGTGGTGGAGTTGATGAGCCGTTTGCATGGGAAAGCAGAGAGTTTCTGAGGAAGCTCTGCATAGGGAAG

upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 2
lower sequence: AC207890.3_FGT002 (Zea mays), 3'ss of exon 1
gtaattttacttggttcatggaattgaaattgctgtgactgtgaattgaaattcttttgaaattctgttgtaccgattttgtggtttatgatgttttccgtattctaatttcaaaattgaaaatgctttctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG
                                                                              |||   |||    | | | |    ||  ||||  |   ||    ||  |||      | ||   ||    ||||  ||    || ||| || |     ||   ||||| ||  | ||||| || || ||||| ||||| |||||||| |||||||||||| |||||||||| || ||||||
------------------------------------------------------------------------------ttgcactttgaactatgtactcagtttcaattgtagc-ttcttgatattttactcatttctctagat---tttattttttgcttgtttattcatggtgttc--tagGCTCGCCGTGGTGGAGTTGACGAGCCCTTTGCATGGGAAAGCAGAGAGTTTCTAAGGAAGCTTTGTATAGGGAAG

upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaattttacttggttcatggaattgaaattgctgtgactgtgaattgaaattcttttgaaattctgttgtaccgattttgtggtttatgatgttttccgtattctaatt--tcaaaattgaaaatgctttctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG
                                                                         |   ||||   || |  | |  |||| | |   || |  |   | |   ||| | ||||  |   |  ||| |  | ||    ||    || |||| ||     || |   |||| || ||||| ||| |||||||||| ||||| |||||||| || ||||||||| |||||||||||||||| |||
-----------------------------------------------------------------------gtcagctttg---ttaaaaaagcattccttttcacaactctttttactaacaaaagttttcaatttcatagct-acttattatgtttctcattgtttggtttgcctttgtttcagGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAG

upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 3'ss of exon 2
gtaattttacttggttcatggaattgaaattgctgtgactgtgaattgaaattcttttgaaattctgttgtaccgattttgtggtttatgatgtttt-ccgtattctaatttcaaaattgaaaatgctttctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG
                                                                          |||||||   || |  |  ||||    | |||   | | | |||  |   |  |   |   ||  ||    || || |   ||    |    | | | |     ||  ||||| ||||| ||||| || |||||||||||||| ||||| || ||||||| | || ||||||| |||||||| |||
-------------------------------------------------------------------------ggattttg---ttaagaacattttgttttgttcagctgtgataataaatggtattgattagacttatgactgggagtctctttt----tctcctctctca-----ttcctagGCCCGTAGGGGTGGAGTTGATGAGCCGTTTGCATGGGACAGCAGAGAGTATTTAAGGAAGCTCTGCATTGGAAAG

upper sequence: GLYMA08G00910.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 3'ss of exon 1
gtaattttacttggttcatggaattgaaattgctgtgactgtgaattgaaattcttttgaaattctgttgtaccgattttgtggtttatgatgttttccgtattctaatttcaaaattgaaaatgctttctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattt-----tgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG
                                                                                      | ||   ||     ||    | |||  ||||    ||| || | | | | |         | | |||  | |  |  ||| ||| || || |       |||||| |||||||||||| | ||||| || ||||| ||||| |||||||||| | |  |||| || ||||| || |||
--------------------------------------------------------------------------------------tttggcattactaataccacactttttaaat---gaattctctatattccatactcttattctgtaccctgacctgatttttttgaatatctattgactatagGCCCGTAGAGGTGGTATTGATGAACCATTTGCATGGGATAGTAGAGAGTATTTGAGGAAACTCTGCATAGGAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717742|gb|BW654030.1|BW654030
EST:     CTTTGCCTGAAAAGTCCATCACGTTATCATCTCTAATGGCTCCTAGACTG                         GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTT
genomic: CTTTGCCTGAAAAGTCCATCACGTTATCATCTCTAATGGCTCCTAGACTGgtaattttac ... attttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTT
EST: gi|209703881|gb|BW667922.1|BW667922
EST:     CTTTGCCTGAAAAGTCCATCACGTTATCATCTCTAATGGCTCCTAGACTG                         GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTT
genomic: CTTTGCCTGAAAAGTCCATCACGTTATCATCTCTAATGGCTCCTAGACTGgtaattttac ... attttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTT
EST: gi|213593207|gb|DB966088.1|DB966088
EST:     CTTTGCCTGAAAAGTCCATCACGTTATCATCTCTAATGGCTCCTAGACTG                         GCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTT
genomic: CTTTGCCTGAAAAGTCCATCACGTTATCATCTCTAATGGCTCCTAGACTGgtaattttac ... attttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgctactgctgaggtgtttacattaaagttctttgtttaaaaattttgatagGCGCGTAGAGGTGGTGTAGATGAGCCGTTTGCGTGGGAAAGTAGAGAGTTTCTACGGAAGCTTTGCATTGGGAAG
                   tttacattaaagttct  TA-rich tract