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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agagggggctggggaagaatcatagtgttcaatggagggaatgagatgtgtttttgggaagaggtttcttattattgaatctaattgtgttatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGA

Basic information

species Glycine max
transcript GLYMA08G00740.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G00740.2 (Glycine max), 3'ss of exon 2
lower sequence: AT5G63620.2 (Arabidopsis thaliana), 3'ss of exon 1
agagggggctggggaagaatcatagtgttcaatggagggaatgagatgtgtttttgggaagaggtttcttattattga-atctaattgtgttatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGA
                   || |  | |||   |||    ||   ||   ||| | |||   |  || | |   ||   ||  | ||  |||   | | ||| |||||||| |||||||||||||| ||||| |||||||| || || |||||  | |||||||||||| | || ||||||||||| ||||| ||||||||
--------------gttcttcttcattttctg-ggatttgattgaatcaatttgtaggattcgagttttgaaagttagtattcattttcgtttgtgggcagCTTGTGGAGTTTGCCACTCTGATCTTCATGTGATGAAAGGAGAGATACCGTTCGCTAGTCCTTGTGTTATTGGTCATGAGATTACTGGTGAAGTTGTTGA

upper sequence: GLYMA08G00740.2 (Glycine max), 3'ss of exon 2
lower sequence: Vv07s0031g03150.t01 (Vitis vinifera), 3'ss of exon 1
agagggggctggggaagaatcatagtgttcaatggagggaatgagatgtgtttttgg-------gaagaggtttcttattattgaatctaattgtgttatgg-------tgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGA
              | |||||  ||| || |   | |||| |    | |  | ||         ||| |        |  | |||  ||   ||  || |||       || ||||||||||||||| ||||||||||| |||||||| ||||| ||| |||| ||| | || |||||||| |||||||| ||||| || ||||||||||||||
------------aaaggaatc--agtctttatatgcgggattctcttttcctcttcttctatctgaaaaaagcctagaacaatgacactggctgaattttggaattaaatgcagCCTGTGGAGTATGTCACTCTGATCTGCATGTTATCAAAGGAGAACTTCCATTTGCTAGCCCTTGTGTGGTGGGGCACGAGATAACGGGTGAGGTTGTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254329030|gb|GR833402.1|GR833402
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|298172796|gb|HO020350.1|HO020350
EST:     ACTTCACATGCCCCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|192331064|gb|FK020284.1|FK020284
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|192294016|gb|FG987185.1|FG987185
EST:     ATTTCGCATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|192330970|gb|FK023125.1|FK023125
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|254330134|gb|GR839687.1|GR839687
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|209714515|gb|BW684878.1|BW684878
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
EST: gi|4396346|gb|AI495343.1|AI495343
EST:     ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGG                         CCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT
genomic: ATTTCACATGCCTCGCCCCAAGGCCGGTGAAGTTCTCATCAAAACAAAGGgtaagggtac ... tatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtgtttttgggaagaggtttcttattattgaatctaattgtgttatggtgtagCCTGTGGAGTATGCCACTCTGATCTACATGTTATGAAAGGTGAAATTCCGTTTACCAGTCCTTGTGTTGTGGGGCATGAGATTACCGGTGAGGTTGTTGA
                                 atctaat  putative branch site (score: 3)
                   tttcttattattgaat  TA-rich tract