1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtccagatttacacttaagagttacttacactcactcactaacctactccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGGCGGAGTATGCCGGCGTCCAAGTTGACTTTGCCCCAAATTTTGAGATGG
species | Glycine max |
transcript | GLYMA07G40330.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGEST: gi|151397206|gb|EV267079.1|EV267079
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGEST: gi|37995961|gb|CF807550.1|CF807550
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGTTTTTCATTGCGEST: gi|14259347|gb|BG882247.1|BG882247
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGEST: gi|8285571|gb|BE023130.1|BE023130
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGEST: gi|298183837|gb|HO029050.1|HO029050
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGEST: gi|209723407|gb|BW651349.1|BW651349
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGEST: gi|20812959|gb|BQ297437.1|BQ297437
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
EST: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTG ATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
genomic: AAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGgtgagtccag ... ccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCG
cagatttacacttaagagttacttacactcactcactaacctactccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGGCGGAGTATGCCGGCGTCCAAGTTGACTTTGCCCCAAATTTTGAGATGG
cactaac putative branch site (score: 1)
cctactccttttct CT-rich tract
ttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtccagatttacacttaagagttacttacactcactcactaacctactccttttctagATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGGCGGAGTATGCCGGCGTCCAAGTTGACTTTGCCCCAAATTTTGAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG