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21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' |
gtatgtatacacatgttctgatgttcatatgcattgtggctgttcatgatgaatggttttcgatttcttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCAATGAGTTGAGCAAAGCAACGTTTAAGGCCGATGCTGATCTGGAGGTCA
species | Glycine max |
transcript | GLYMA07G40230.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAACTTGTGGAAACATGTACAACCTAGCTTTGACTAGCATACTAGAAAAG ATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCEST: gi|208148790|gb|GD945436.1|GD945436
genomic: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGgtatgtatac ... cttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTC
EST: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAG ATGACTGGGAAGGACAAAGATTACAGATATATEST: gi|213600096|gb|DB964302.1|DB964302
genomic: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGgtatgtatac ... cttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATAT
EST: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAG ATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCEST: gi|213613547|gb|DB963263.1|DB963263
genomic: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGgtatgtatac ... cttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTC
EST: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAG ATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCEST: gi|209717236|gb|BW657705.1|BW657705
genomic: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGgtatgtatac ... cttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTC
EST: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAG ATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCEST: gi|213619876|gb|DB971135.1|DB971135
genomic: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGgtatgtatac ... cttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTC
EST: AAACTTGTGGAAACATGGCCAACCTAGCTTTGACTAGCATACTAGAAAAG ATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTC
genomic: AAACTTGTGGAAACATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGgtatgtatac ... cttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTC
tgttcatatgcattgtggctgttcatgatgaatggttttcgatttcttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCAATGAGTTGAGCAAAGCAACGTTTAAGGCCGATGCTGATCTGGAGGTCA
ttttcgatttcttc CT-rich tract
atttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtatacacatgttctgatgttcatatgcattgtggctgttcatgatgaatggttttcgatttcttcgcgcagATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCAATGAGTTGAGCAAAGCAACGTTTAAGGCCGATGCTGATCTGGAGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG