1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacaatttttatttttatttttaaaaaaaatccctttttcttctgcacatcacattttccgattcttgttagttagttctaataggaataacgttgtattctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTGTCAATGCCGCCTTTTTGGCTGCCCTTTACAGTGATTATCTCGATGCTGC
species | Glycine max |
transcript | GLYMA07G40090.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAAEST: gi|254320158|gb|GR829346.1|GR829346
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatt ... tctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAA
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTGEST: gi|15200976|gb|BI424628.1|BI424628
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatt ... tctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG
EST: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGG GTGGCTTGTTTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG
genomic: AGTCATGTGCTCCTACCTCCCAATGTTCACCAGCTTTAATAGAACAAGGGgtaaacaatt ... tctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTG
ttttccgattcttgttagttagttctaataggaataacgttgtattctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTGTCAATGCCGCCTTTTTGGCTGCCCTTTACAGTGATTATCTCGATGCTGC
gaataac putative branch site (score: 2)
ttctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaatttttatttttatttttaaaaaaaatccctttttcttctgcacatcacattttccgattcttgttagttagttctaataggaataacgttgtattctgcaccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTTGTCAATGCCGCCTTTTTGGCTGCCCTTTACAGTGATTATCTCGATGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC