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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttatgtattctgtggtgtgaaaataatggacctcctttggtggagtggatgcataattgataagaatacataatctctatttgtgcttcttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA

Basic information

species Glycine max
transcript GLYMA07G39870.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796605|gb|AW782002.1|AW782002
EST:     TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
genomic: TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGgtatttcctt ... ttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|27445805|gb|CA952928.1|CA952928
EST:     TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
genomic: TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGgtatttcctt ... ttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|19347568|gb|BM892448.1|BM892448
EST:     TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
genomic: TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGgtatttcctt ... ttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|192299493|gb|FG990802.1|FG990802
EST:     CCATCCATGTCTACTTTTGCAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
genomic: CCATCCATGTCTACTTCTGCAAAATCCCGAGgtatttcctt ... ttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|151402278|gb|EV272091.1|EV272091
EST:     TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
genomic: TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGgtatttcctt ... ttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
EST: gi|254317259|gb|GR826204.1|GR826204
EST:     TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAG                         ATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA
genomic: TCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGgtatttcctt ... ttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggatgcataattgataagaatacataatctctatttgtgcttcttgggtgcagATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA
          aattgat  putative branch site (score: 4)
                                       tgcttctt  putative PPT
        ataattgataagaata  TA-rich tract