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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatattccttttatgccattctcttattatgtgacgataatgctttttcctgttataatcattcttcattagttgagttaggttaattgaatttccttttatgccattctcttattatgagacgattttttgtgaaatttcatccttgcttctctatttgccctccgcagGTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAG

Basic information

species Glycine max
transcript GLYMA07G39450.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395965|gb|EV265842.1|EV265842
EST:     CAACCAAACTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAG                         GTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAG
genomic: CAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAGgtatatattc ... ccctccgcagGTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAG
EST: gi|298174570|gb|HO017793.1|HO017793
EST:     CAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAG                         GTTTGGGCTATTGCTGATGCCAAAAGGCAAGGATATTTGGGTTTTCAAGAG
genomic: CAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAGgtatatattc ... ccctccgcagGTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAG
EST: gi|7146390|gb|AW508312.1|AW508312
EST:     CAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAG                         GTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAG
genomic: CAACCAAATTCTTTGCTCTCTCCAACTTATCTCGCTCTCAACTCAAGCAGgtatatattc ... ccctccgcagGTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgagacgattttttgtgaaatttcatccttgcttctctatttgccctccgcagGTTTGGGCTATTGCTGATGCCAAAAGACAAGGATATTTGGGTTTTCAAGAGTTTGTTATGGCAATGCAG
                      tttcatccttgcttct  CT-rich tract
         attttttgtgaaattt  TA-rich tract