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gtaaagaataatcttctattgagttgagttgaatcagtgttttgattctgcgtgttgcgtaggtttatgtggttttgttttaatttgaacgtttgattttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTA
species | Glycine max |
transcript | GLYMA07G39380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGEST: gi|7591049|gb|AW706790.1|AW706790
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGEST: gi|207700556|gb|GD683663.1|GD683663
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG ATTACCTGCAAGACCTTGCAGAAEST: gi|193585833|gb|FK541233.1|FK541233
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAA
EST: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGEST: gi|254323780|gb|GR836119.1|GR836119
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGEST: gi|213599182|gb|DB958401.1|DB958401
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
EST: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCG ATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
genomic: GTCCGGTGGCCAGGCTCCCGGCGGTCACAATGTTATTTCTGGAATCTTCGgtaaagaata ... ttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTG
gttgcgtaggtttatgtggttttgttttaatttgaacgtttgattttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTA
ttttgttttaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagaataatcttctattgagttgagttgaatcagtgttttgattctgcgtgttgcgtaggtttatgtggttttgttttaatttgaacgtttgattttggttttagATTACCTGCAAGACCTTGCAGAAGGAAGCACATTGTATGGTTTCAGGGGTGGTCCAGCTGGCATCATGAAGTGCAAATACGTTGAACTTACCTCAGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG