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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaactatgaacaaaaatgagtgaatactacatcactacatcagctgaggagaatatgatcttgaagttttctgtttctgttatgcagACTTAAAATCTTTGTTCCAATAGCATTTCTGGCATGGGCAGTTCTGGTTCCTGTCAACGCCACAAGTACCGGTCTAGAAAGCGCTGGTCGGGACAACATA

Basic information

species Glycine max
transcript GLYMA07G39320.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193628773|gb|FK577609.1|FK577609
EST:     GACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGG                         ACTTAAAATCTTTGTTCCAATAGCATTTCTGGCATGGGCAGT
genomic: GACCATGCTGGATTGGACTCTGTTGTTTACTTGAGGATTTACTTGATAGGgtatgaacta ... tgttatgcagACTTAAAATCTTTGTTCCAATAGCATTTCTGGCATGGGCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactacatcagctgaggagaatatgatcttgaagttttctgtttctgttatgcagACTTAAAATCTTTGTTCCAATAGCATTTCTGGCATGGGCAGTTCTGGTTCCTGTCAACGCCACAAGTACCGGTCTAGAAAGCGCTGGTCGGGACAACATA
                                  ttttctgtttctgtt  CT-rich tract
                   aatatgat  TA-rich tract