1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttagacaccccccacttggccattattcatttcttggcagcatttcatctgttgacttattgtttagtatttaaccatcagactatgattattggcagGCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAG
species | Glycine max |
transcript | GLYMA07G38570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGAGAATTTGGCTGCAAGGTTTCTGAGTGATGTTCAAATTCCCGAG GCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAGEST: gi|209701177|gb|BW664225.1|BW664225
genomic: TCTTGGAGAATTTGGCTGCAAGGTTTCTGAGTGATGTTCAAATTCCCGAGgtaatgtttg ... ttattggcagGCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAG
EST: TCTTGGAGAATTTGGCTGCAAGGTTTCTGAGTGATGTTCAAATTCCCGAG GCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAG
genomic: TCTTGGAGAATTTGGCTGCAAGGTTTCTGAGTGATGTTCAAATTCCCGAGgtaatgtttg ... ttattggcagGCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAG
ttcatctgttgacttattgtttagtatttaaccatcagactatgattattggcagGCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAG
atttaac putative branch site (score: 3)
ttattgtttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttagacaccccccacttggccattattcatttcttggcagcatttcatctgttgacttattgtttagtatttaaccatcagactatgattattggcagGCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -caccccc
- - - - - - - cacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accatca