1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgtaatttcctttagagtagactcccaatttttgttaacttagtttgaaaattgtctgatggattttcttgaattgagattttgggcaatttaacaggaacaacatgcaactgttacattttttgttctttcgtctcagGTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTACATTCGTTACATCGCCATGAGAAGCTGGCAATTGCTGTTTCAAAAGCTA
species | Glycine max |
transcript | GLYMA07G36720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAATTGAGGCTGAG GTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTAEST: gi|208218146|gb|GE018320.1|GE018320
genomic: GAAGAAATTGAGGCTGAGgtttgtaatt ... ttcgtctcagGTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTA
EST: TGGAAAAGGGTCACAATTACAGTATTAACATAGAAGAAATTGAGGCTGAG GTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTAEST: gi|298187804|gb|HO031761.1|HO031761
genomic: TGGAAAAGGGTCACAATTACAGTATTAACATAGAAGAAATTGAGGCTGAGgtttgtaatt ... ttcgtctcagGTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTA
EST: GGAAAAGGGTCACAATTACAGTATTAACATAGAAGAAATTGAGGCTGAG GTGTAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTA
genomic: GGAAAAGGGTCACAATTACAGTATTAACATAGAAGAAATTGAGGCTGAGgtttgtaatt ... ttcgtctcagGTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTA
ggcaatttaacaggaacaacatgcaactgttacattttttgttctttcgtctcagGTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTACATTCGTTACATCGCCATGAGAAGCTGGCAATTGCTGTTTCAAAAGCTA
atttaac putative branch site (score: 3)
cattttttgttctttc putative PPT
ttacattttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtaatttcctttagagtagactcccaatttttgttaacttagtttgaaaattgtctgatggattttcttgaattgagattttgggcaatttaacaggaacaacatgcaactgttacattttttgttctttcgtctcagGTGAAAAGCATGCTTCACGATGGGCAAGAATTAGTAATTATTGGGGGTGTACATTCGTTACATCGCCATGAGAAGCTGGCAATTGCTGTTTCAAAAGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT