1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ttccagaaatgtcatgttatcccaatccattgtgtaagaatggaagttcattaagaacttgttgccatgatttcttacggaagttgttcttgtttagtagGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTTTACAGTCAGGATCCCCA
species | Glycine max |
transcript | GLYMA07G36550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGC TEST: gi|298175477|gb|HO015110.1|HO015110
genomic: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCgtaagttcga ... tgtttagtag-
EST: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGC TEST: gi|298175477|gb|HO015110.1|HO015110
genomic: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCgtaagttcga ... tgtttagtag-
EST: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGC TEST: gi|298175477|gb|HO015110.1|HO015110
genomic: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCgtaagttcga ... tgtttagtag-
EST: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGC TEST: gi|151395938|gb|EV265815.1|EV265815
genomic: CGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCgtaagttcga ... tgtttagtag-
EST: ATATATTCGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGC GCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGA
genomic: ATATATTCGGAGATATTGGAGTACCGGAAAAACTCTGTCTCGTCCAGAGCgtaagttcga ... tgtttagtagGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGA
gttcattaagaacttgttgccatgatttcttacggaagttgttcttgtttagtagGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTTTACAGTCAGGATCCCCA
ttcttac putative branch site (score: 2)
ttcttgttt putative PPT
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccagaaatgtcatgttatcccaatccattgtgtaagaatggaagttcattaagaacttgttgccatgatttcttacggaagttgttcttgtttagtagGCAATCGGACATCAACTTAGTTGAAATGGGCAGTGATGTTGTTAAAGATGAAGACAGAGCAGTTTTATTGGAGGGAGGAGCTTTACAGTCAGGATCCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - -tcatgtt
- - - - - - - - - - -ccaatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc