1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaattggcatgattgtaggtgcccatatggtctatctatacgtgtgttcacattggttatatagtccaagagatttgagtaccaagcttgaagagttttaaagaaagcatatgaggaaaataagatgaaatttagatttgatatcctaattattgatttgttgcctgttgcagATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATGGGAAAGGCTAAGAGCACCTCCTATTGATACTTCTCCGCATGATCTTCAT
species | Glycine max |
transcript | GLYMA07G36360.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTTTCAAGCCAG ATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATGEST: gi|7283576|gb|AW596182.1|AW596182
genomic: ACCTTTCAAGCCAGgtaattggca ... cctgttgcagATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATG
EST: TATGATGCTGAACTTAGCTATGATCCACAAACTGATACCTTTCAAGCCAG ATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATG
genomic: TATGATGCTGAACTTAGCTATGATCCACAAACTGATACCTTTCAAGCCAGgtaattggca ... cctgttgcagATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATG
aataagatgaaatttagatttgatatcctaattattgatttgttgcctgttgcagATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATGGGAAAGGCTAAGAGCACCTCCTATTGATACTTCTCCGCATGATCTTCAT
aaatttagatttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattggcatgattgtaggtgcccatatggtctatctatacgtgtgttcacattggttatatagtccaagagatttgagtaccaagcttgaagagttttaaagaaagcatatgaggaaaataagatgaaatttagatttgatatcctaattattgatttgttgcctgttgcagATATCCTCCACATGGAAGAAGGGCAGGTGCTAGAGAGTGTGGCATCCCATGGGAAAGGCTAAGAGCACCTCCTATTGATACTTCTCCGCATGATCTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA