1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtgttggtattgcttcttggaccatgtggaccagtttttaaaaacttccatacaattaagattatctttcattttatgtgactatttccattgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGAAACAAGGTAATGAAATAACCATTTCCACTGACTATGACCTAAAGGGTG
species | Glycine max |
transcript | GLYMA07G35110.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGEST: gi|209727406|gb|BW669859.1|BW669859
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGEST: gi|193567157|gb|FK526910.1|FK526910
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST: CCGCCATGGAGAACACCGGTATTCTCTGCGTCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGEST: gi|209698021|gb|BW675639.1|BW675639
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
EST: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAG GGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
genomic: CCGCCATGGAGAACACCGGTATTCTCTGCGCCGTCATGCTCGACACCAAGgcacgcccca ... attgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTG
cttccatacaattaagattatctttcattttatgtgactatttccattgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGAAACAAGGTAATGAAATAACCATTTCCACTGACTATGACCTAAAGGGTG
tttccatt CT-rich tract
atacaattaagattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgttggtattgcttcttggaccatgtggaccagtttttaaaaacttccatacaattaagattatctttcattttatgtgactatttccattgctgtagGGGCCTGAGATTCGAACTGGGTTTCTCAAGGACAGTAAGCCTATCCAACTGAAACAAGGTAATGAAATAACCATTTCCACTGACTATGACCTAAAGGGTG
-gtgttgg
- - - - - -tgcttct
- - - - - - - - - - - ccatgtg
- - - - - - - - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgacta