1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaaataaaaaacaaaccaattgttacctaagaaatgttatcgtaacacactcagaaaagatgaaaggaagacaatatcattaattcttttaacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCTATCCTGAAGTTGTAAGCTTTATTGAAGATGAAAAAGATCAATTTCCAT
species | Glycine max |
transcript | GLYMA07G32960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298183243|gb|HO028456.1|HO028456
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAGG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298172471|gb|HO019511.1|HO019511
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192294091|gb|FG986180.1|FG986180
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298181841|gb|HO026016.1|HO026016
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTGCTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|10709622|gb|BF009346.1|BF009346
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298198605|gb|HO040144.1|HO040144
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCCGCATGAGGAAACTTGTTTTCEST: gi|9439728|gb|BE440242.1|BE440242
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192300920|gb|FG992980.1|FG992980
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|7029651|gb|AW459368.1|AW459368
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298172644|gb|HO019684.1|HO019684
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298178377|gb|HO024112.1|HO024112
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298174849|gb|HO017958.1|HO017958
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|192300921|gb|FG992981.1|FG992981
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|23054540|gb|BU577628.1|BU577628
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|193558801|gb|FK510798.1|FK510798
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|15201665|gb|BI424992.1|BI424992
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298196432|gb|HO041175.1|HO041175
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298197208|gb|HO041951.1|HO041951
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAAACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298177783|gb|HO027336.1|HO027336
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298170253|gb|HO018877.1|HO018877
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|298176443|gb|HO026678.1|HO026678
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACCTGTTTTCEST: gi|298188030|gb|HO031987.1|HO031987
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAACACTCCAACGATGCCACTACCAAG GTTACCTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCEST: gi|208340857|gb|GE137419.1|GE137419
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
EST: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAG GTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
genomic: CGGATTGTTTCAAGTGTTGCACCGAAGACTCCAACGATGCCACTACCAAGgtatgaatat ... taacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTC
acacactcagaaaagatgaaaggaagacaatatcattaattcttttaacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCTATCCTGAAGTTGTAAGCTTTATTGAAGATGAAAAAGATCAATTTCCAT
ttttaac putative branch site (score: 2)
ttcttttaactttt CT-rich tract
acaatatcattaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaataaaaaacaaaccaattgttacctaagaaatgttatcgtaacacactcagaaaagatgaaaggaagacaatatcattaattcttttaacttttagGTTACTTACTCTGGAGCTGTGTTGGAAGTCTGCATGAGGAAACTTGTTTTCTATCCTGAAGTTGTAAGCTTTATTGAAGATGAAAAAGATCAATTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA