1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttcggaattcgctcttcgattttcggttcaattgttctagggttttggattgtgatgttcgagtttggaattagggttttgtatcgttttttgtggttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGGCGAAGCAGCTCGCTGCACAGCTGATTCCCAGGTTCTACAAGTTCTTTC
species | Glycine max |
transcript | GLYMA07G32480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAG AATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGEST: gi|213617036|gb|DB961516.1|DB961516
genomic: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAGgttcggaatt ... gttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
EST: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAG AATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGEST: gi|209719847|gb|BW674999.1|BW674999
genomic: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAGgttcggaatt ... gttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
EST: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAG AATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGEST: gi|213590208|gb|DB963813.1|DB963813
genomic: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAGgttcggaatt ... gttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
EST: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAG AATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGEST: gi|23057710|gb|BU578259.1|BU578259
genomic: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAGgttcggaatt ... gttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
EST: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAG AATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGEST: gi|6566471|gb|AW234116.1|AW234116
genomic: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAGgttcggaatt ... gttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
EST: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAG AATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
genomic: AGCTCTACGAATACGGCGAGCAACTCAACAATGCCAAGGACAAGTCGCAGgttcggaatt ... gttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAG
tgtgatgttcgagtttggaattagggttttgtatcgttttttgtggttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGGCGAAGCAGCTCGCTGCACAGCTGATTCCCAGGTTCTACAAGTTCTTTC
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcggaattcgctcttcgattttcggttcaattgttctagggttttggattgtgatgttcgagtttggaattagggttttgtatcgttttttgtggttctggcagAATGTGCAGGATTACCAGGGAATCATAGATGCGGCGAAGACGAGTGTGAAGGCGAAGCAGCTCGCTGCACAGCTGATTCCCAGGTTCTACAAGTTCTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT