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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttgaaattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA

Basic information

species Glycine max
transcript GLYMA07G32190.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os01g13770.3 (Oryza sativa), 3'ss of exon 1
---------------------------tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccga-gtgttgaaattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
                           ||   |    |  ||        |  || || | |   | |  | | |||    | |  || |  | ||| ||||||||| |   |  | ||     | ||||||||||||||||| || |||||||||||||| |||||||| ||||| |||||||||||||||||
gtatggttttctgccacaataatcgcgtgacctacacctctgcgttgtttattgaattgaattgatttcacagcgattattcagctgtttgaagattgccattttgtgcaagtgatctt-----gtagGTACTTCTTGAACGTTATATTCAACATCCTCAATAAGAAGATATACAACTACTTCCCCTATCCATA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os05g15160.1 (Oryza sativa), 3'ss of exon 2
-tgtgttgtgtccatgaagaacagaa-agacttta---ttacgtgtgg-----ctgtgatcgccccgagtgttgaaatt--accattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
 | || |   ||     ||  ||    ||| ||||   || |  |||      ||| ||     | |  |  ||   ||   | |||      | |   | |  |  || ||||| ||  |||||||||| || |||||||| ||||||||||||| | | |||||||||||||||||
gtatgcttactcacctgagcgcactttagaatttacaattgcaggtgagcgaactgagaagttgctgcctaatgtggtttagctattgccaattcacaatatgattttgtagGTATTTTCTGAACGTGATATTTAACATCCTTAACAAGAAGATCTTCGACTACTTCCCCTATCCATA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G070605_T01 (Zea mays), 3'ss of exon 2
tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttgaaattaccattttgtcct----tattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
                                  ||||| ||  | |   | |      || |  |    |  || ||||||     |   |   ||  |||||||||||| | ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
---------------------------------gtacgtttgtttctctgcacatt---tgcttcatcacctgttctgtcctgtgtaaacatgggcttctgcagGTACTTCCTCAACGTCATATTCAACATCCTCAACAAGAAGATCTACAACTACTTCCCCTATCCATA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: GRMZM2G083344_T03 (Zea mays), 3'ss of exon 2
---tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttga-aattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
   |||    |  ||   |     |    | ||  || |   |  |     | |   ||    | | | | ||   ||| |  | || |  |       |||||||| ||  |||| || || || |||||||||||||||||||||| | | |||||||||||||||||
gtatgttcacttacctctattgctaatctggctgcatgaaacggtgtaaaaaacattcctttggataatagttttaattgtcgctttgtgatcaaaccttgcagGTATTTTCTGAATGTAATATTTAACATCCTCAACAAGAAGATCTTCGACTACTTCCCCTATCCATA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv10s0003g00300.t01 (Vitis vinifera), 3'ss of exon 2
-tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtg----------------ttgaaattaccattt-----tgtccttatt---cttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
 |  ||  |  || | |  |||  | |   | ||  |       |   | ||     ||||                 |  ||||  |  |||     |||| |||      | | ||  | |||||| ||| | ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||
gtaggtcatcaccgttaccaactaacaacatctacaattctcttcaacggtcagaaagagtcaaaataaaatggtgattcaaaatccctgtttctgggtgtctttaccaaattgtactttttcagGTATTTCCTCAACGTTATATTCAACATCCTCAACAAGAAGATCTACAACTACTTCCCATATCCTTA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S450_22V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------------tgtgttgtgtccatgaagaacagaaagacttta---ttacgtgtggctgtgatcgccccgagtgttgaaattacca----ttttgtccttattcttttctgatgc------------agGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
                                             | | || ||||  | || | |  | |    | |    | ||| | |   ||||| ||| |  |  |||      ||    |||       |||    | | ||||            ||||||||||||||||| || ||||||||| | ||||||||||||||||| || || ||||| || ||
gtacacattctactcttgtgcagtgctattgagccaaatgcaccgtctattctgtc--tcaacagctaagatgtctgaaaactgcgtcttgagatgatctccctgctttctgaggcagtcaggagtttcagggagattaaaatgtaatgcttgttgtgtattagGTACTTCTTGAACGTCATCTTCAACATCATGAACAAGAAGATCTACAACTATTTTCCCTACCCCTA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: PP1S450_17V6.1 (Physcomitrella patens), 3'ss of exon 2
---tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttgaaattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
   || | ||| |  || | | |     |||     |  | | |   |||| | | |  |||| |      ||  ||   ||  |    || || ||   |||||||||| |||| || || ||||||||| | ||||||||||||||||| ||||| ||||| || ||
ggctgcgctgtttgaat-atgcatcatgagatgcattcccttctttttgtggttgtctagagtttcagggctatgatgccgtgatg--cctgttgtgtgtcagGTACTTCCTGAATGTTATCTTCAACATCATGAACAAGAAGATCTACAACTACTTTCCCTACCCTTA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ15759 (Selaginella moellendorffii), 3'ss of exon 2
tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttgaaattaccattttgtccttat--tcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
                     ||  |  |||| |         |  |  |      |  | |  |  || |  | |||    |    ||||   |  |||||||| ||  | || ||||| ||||||||||| |||||||||||||||||||| || || ||||||||
-------------------gtaggcatgctttttctt------ccttccttattttgcttttccacttttctctcttgcaaatgagatcttccttcttgcagGTATTTTCTCAATGTGATCTTCAACATCCTTAACAAGAAGATCTACAATTATTTTCCTTATCCATA

upper sequence: GLYMA07G32190.1 (Glycine max), 3'ss of exon 2
lower sequence: EFJ38162 (Selaginella moellendorffii), 3'ss of exon 1
tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttgaaattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
                     ||  |  |||| |      |   | |   |    | | |||     |  |  ||          ||||   |  |||||||| ||  | || ||||| ||||||||||| |||||||||||||||||||| || || ||||||||
-------------------gtaggcatgctttttcttccttccttttttgcttttccactgt-----tctctcttgcaaatgagatcttccttcttgcagGTATTTTCTCAATGTGATCTTCAACATCCTTAACAAGAAGATCTACAATTATTTTCCTTATCCATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720817|gb|BW677391.1|BW677391
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|120534376|gb|EH262509.1|EH262509
EST:     TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213600485|gb|DB966194.1|DB966194
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|7041761|gb|AW471655.1|AW471655
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213615350|gb|DB963544.1|DB963544
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|20449842|gb|BQ253966.1|BQ253966
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAA
EST: gi|13480400|gb|BG509743.1|BG509743
EST:     ACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: ACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|20448694|gb|BQ252818.1|BQ252818
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|120534368|gb|EH262501.1|EH262501
EST:     TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213589339|gb|DB961672.1|DB961672
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|20448800|gb|BQ252924.1|BQ252924
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213587747|gb|DB955609.1|DB955609
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|209721814|gb|BW680013.1|BW680013
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|120531507|gb|EH259640.1|EH259640
EST:     TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|20812093|gb|BQ296571.1|BQ296571
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|15285164|gb|BI469055.1|BI469055
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|11412623|gb|BF424634.1|BF424634
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|17519248|gb|BM188290.1|BM188290
EST:     GGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: GGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213587892|gb|DB959716.1|DB959716
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|10232571|gb|BE801459.1|BE801459
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|17153411|gb|BM143344.1|BM143344
EST:     CCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: CCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|15337762|gb|BI498418.1|BI498418
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|26058933|gb|CA801847.1|CA801847
EST:     TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|16104872|gb|BI892612.1|BI892612
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|7691923|gb|AW760040.1|AW760040
EST:     GGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: GGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213593376|gb|DB973569.1|DB973569
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|193705590|gb|FK643540.1|FK643540
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|23059611|gb|BU578385.1|BU578385
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213602207|gb|DB958467.1|DB958467
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGACCGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|24137046|gb|BU927556.1|BU927556
EST:     TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|213590584|gb|DB973329.1|DB973329
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|15287351|gb|BI471242.1|BI471242
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
EST: gi|10847076|gb|BF069843.1|BF069843
EST:     TTCTTCGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTG                         GTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA
genomic: TTCTTTGACAAGTACCCGGCTCTGGTCACCGGATTTTTCTTCTTCACGTGgtacgtcacg ... tctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatcgccccgagtgttgaaattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA
                                            ttctgat  putative branch site (score: 3)
                         ccattttgtccttatt  CT-rich tract
                                    ttattctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtgttgtgtccatgaagaacagaaagactttattacgtgtggctgtgatcgccccgagtgttgaaattaccattttgtccttattcttttctgatgcagGTACTTCTTGAACGTGATTTTCAACATCCTCAACAAGAAGATCTACAATTACTTCCCCTATCCATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- tgttgtg
- - - - - ccatgaa
- - - - - - - - - - - gaaagac
- - - - - - - - - - - - - - - - - - - - tggctgt
- - - - - - - - - - - - - - - - - - - - - - - - -tcgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtgtt