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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtataaaattgaggttgttaaaatccgcagtttctttttttctatttatagtgtgttgttgccagtattgattgtggttttgctaattctgatctatttcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG

Basic information

species Glycine max
transcript GLYMA07G31090.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10842945|gb|BF066303.1|BF066303
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|298199298|gb|HO042661.1|HO042661
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCGATG                         GATTTGAAAAAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGA
EST: gi|23057519|gb|BU578193.1|BU578193
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
EST: gi|17519206|gb|BM188248.1|BM188248
EST:     ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATG                         GATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA
genomic: ATAATTATGGCTTTGGTGCGACAGTTGATATACCTCTTGATTCATCAATGgtatgtataa ... tcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgttgccagtattgattgtggttttgctaattctgatctatttcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG
                                       tctatttc  CT-rich tract
            tattgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtataaaattgaggttgttaaaatccgcagtttctttttttctatttatagtgtgttgttgccagtattgattgtggttttgctaattctgatctatttcaacatcagGATTTGAAAAAGAAGGAGAAGGAACTTCAAGCCAAGGAAACTGAATTGAGAAAAAGGGAACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA