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...acctgttcctatataaggaaaaccctggacttattctgcttaccacctgtttaaatgtttccagttttgtgctattttcatagttaaatggttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGATGGA
species | Glycine max |
transcript | GLYMA07G30380.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTEST: gi|21994353|gb|BQ785881.1|BQ785881
genomic: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGgtagtgcact ... gttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATT
EST: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTEST: gi|209703909|gb|BW661599.1|BW661599
genomic: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGgtagtgcact ... gttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATT
EST: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGG ----TTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTEST: gi|209709668|gb|BW673961.1|BW673961
genomic: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGgtagtgcact ... gttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATT
EST: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTEST: gi|209722428|gb|BW668730.1|BW668730
genomic: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGgtagtgcact ... gttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATT
EST: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGG GCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATT
genomic: TCGTGGAGAACGGTGCTCGGGTTGAAGCTGCAGACGTAAATGGATACCGGgtagtgcact ... gttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATT
cctgtttaaatgtttccagttttgtgctattttcatagttaaatggttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGATGGA
ttcctgc CT-rich tract
tattttcatagttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgttcctatataaggaaaaccctggacttattctgcttaccacctgtttaaatgtttccagttttgtgctattttcatagttaaatggttcctgcagGCAGTTCATGTTGCTGCACAATATGGACAGGCAGCTTTCTTAAATCATATTGTAGTAAAGTACCATGCTGATTTTGATGTGCCTGATAATGATGGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- ctgttcc
- - - - - - - aaggaaaa
- - - - - - - - - - - ccctgga
- - - - - - - - - - - - - - - - -ttctgct
- - - - - - - - - - - - - - - - - - - - -accacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtg