1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaaataataattctttatttgtgaatgcaaattgtattcttttaggtagactgtactcatccattaagcacttatacctgatctccttaatgtgtgtagGGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCG
species | Glycine max |
transcript | GLYMA07G29660.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCTCTGGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTTCTTAGCCAG GGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGGEST: gi|208215646|gb|GE015540.1|GE015540
genomic: CTGCTCTGGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTTCTTAGCCAGgcaagcataa ... atgtgtgtagGGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGG
EST: AAAGATTGGAGAAAGCTAGTGAAGAGTCACTTCTTAGCCAG GGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGGEST: gi|23727581|gb|BU761824.1|BU761824
genomic: AAAGATTGGAGAAAGCTAGTGAAGAGTCACTTCTTAGCCAGgcaagcataa ... atgtgtgtagGGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGG
EST: CTGCTCTGGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTTCTTAGCCAG GGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGG
genomic: CTGCTCTGGAAAGATTGGAGAAAGCTAGTGAAGAGTCACTTCTTAGCCAGgcaagcataa ... atgtgtgtagGGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGG
ggtagactgtactcatccattaagcacttatacctgatctccttaatgtgtgtagGGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCG
ccttaat putative branch site (score: 4)
acttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaataataattctttatttgtgaatgcaaattgtattcttttaggtagactgtactcatccattaagcacttatacctgatctccttaatgtgtgtagGGTTTGAAGGTTTTTGATAACTCTGTGGAGACTTTTGCTTCGGGGGCATGGAGTGCTTTAGGAAATGCATGGAGAGGGGGCACTGATTTTGTTCAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
-aaaataa
- - - - - - - - - - - -gaatgca
- - - - - - - - - - - - - - - - -tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - actgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacctg