1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acatgtttatatttcttaagctgttttgcatttcgtcctattgtttgtatgctttaggtcaacttgaaatgtaacttttctgccttttgcttgtatttagCTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAG
species | Glycine max |
transcript | GLYMA07G26540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAAAGCCTTGAGGCTCTCTGAACGGCTCAGAGAAAAGGCCGTTGAAGAG CTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTEST: gi|207719922|gb|GD704409.1|GD704409
genomic: TCAAAGCCTTGAGGCTCTCTGAACGGCTCAGAGAAAAGGCCGTTGAAGAGgttaccacta ... ttgtatttagCTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCT
EST: TCAAAGCCTTGAGGCTCTCTGAACGGCTCAGGGAAAAGGCCGTTGAAGAG CTGACGGAAGAACTGTCAAAGGTTG
genomic: TCAAAGCCTTGAGGCTCTCTGAACGGCTCAGAGAAAAGGCCGTTGAAGAGgttaccacta ... ttgtatttagCTGACGGAAGAACTGTCAAAGGTTG
tgtatgctttaggtcaacttgaaatgtaacttttctgccttttgcttgtatttagCTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAG
atgtaac putative branch site (score: 3)
cttttctgccttttgc CT-rich tract
ttgtattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgtttatatttcttaagctgttttgcatttcgtcctattgtttgtatgctttaggtcaacttgaaatgtaacttttctgccttttgcttgtatttagCTGACGGAAGAACTGTCAAAGGTTGATGGGAAGCTAAAACTAACCGAATCTCTTCTAGAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-catgttt
- - - - - - - - - -gctgttt
- - - - - - - - - - - - - -gcatttc
- - - - - - - - - - - - - - - - - - cctattg
- - - - - - - - - - - - - - - - - - - - - - - gtatgct