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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgcattcataaatcattatattcttactaatgctttctggcaaggttttaatctgccaatttttcttttctttatgttcatgtatatcatgagctttgtgcttttgagcttgggtcttgttattatttcatcagctcataggaagtctttttattttcttacctcgatgttgattctatgcagAATCCGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAAAGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGCCTTGTTAG

Basic information

species Glycine max
transcript GLYMA07G18310.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18310.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0105g00390.t01 (Vitis vinifera), 3'ss of exon 2
gtaattgcattcataaatcattatattcttactaatgctttctggcaaggttttaatctgccaatttttcttttctttatgttcatgtatatcatgagctttgtgcttttgagcttgggtcttgttattatttcatcagctcataggaagtctttttattttcttacctcgatgttgattctatgcagAATCCGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAAAGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGCCTTGTTAG
                                                                                |||  | |   || | | | | |   |     | || |  | |||  || ||| ||| |    ||| ||  ||||   |||  |  |     ||    ||  ||||||| || || ||||| ||||||||||| |||||||| ||||| ||||||||||||||||| || ||||| | |||||| || ||||| || || || ||| |
-------------------------------------------------------------------------------ggttgctttccttcctaatcctag--gtgcaatgtttagagcctgtc-tttttttatctg----tagaaatgctttccctttcat--ctaaagtgagtttttgatgcagAGTCTGAACAAGGGGTTGCACAGGCTATTCTTCGTGGGCTAATAGATTTCAAAAGGGATCCATGGCCAAATATTTCAGAGAGTGCCAAGAGTCTAGTTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcagctcataggaagtctttttattttcttacctcgatgttgattctatgcagAATCCGAGCAAGGAGTTGCACAGGCCATTCTTCGAGGGCTTATAGATTTCAAAAGGGAACCTTGGCCCAGTATTTCTGAAAGTGCTAAAAGCCTTGTTAG
                 tctttttattttctta  TA-rich tract