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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatttaagattcttgtttgcaaatcatgttgaatctgattcttgctcagactgacaaacaaggaatcacccttttgctctgtcatcttatttaacttagAACGCCACTGAGCAACCAGATTTGGTAATTGTGTACTTTGGTGGTAATGATTCTCTTCTTCCACATCCAAGTGGTCTTGGTCAACATGTACCTCTCCAAG

Basic information

species Glycine max
transcript GLYMA07G18210.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208254011|gb|GE055989.1|GE055989
EST:     GTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCTAAG                         AACGCCACTGAGCAACCAGATTTGGTAATTGTGTACTTTGGTGGTAATGAT
genomic: GTTGGAATTCAAGGCGTGCTGTGCAAGTTCTGGATGAAATTTTCCCTAAGgtattaacaa ... tttaacttagAACGCCACTGAGCAACCAGATTTGGTAATTGTGTACTTTGGTGGTAATGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcagactgacaaacaaggaatcacccttttgctctgtcatcttatttaacttagAACGCCACTGAGCAACCAGATTTGGTAATTGTGTACTTTGGTGGTAATGATTCTCTTCTTCCACATCCAAGTGGTCTTGGTCAACATGTACCTCTCCAAG
                                        tcttattt  CT-rich tract
                                       atcttatttaactta  TA-rich tract