1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tccacctacaatcttgagtaaatacgtcaaatctgatgtggtttaatatgagctttaaactgtgtttgtttatgcttctattccatgattgatatattagGGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAACTTCATTTCCTAGCACATGGACATTCAGTAGTGGTCAACCTTGTATTGG
species | Glycine max |
transcript | GLYMA07G18160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATG GGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAAEST: gi|16996461|gb|BM085833.1|BM085833
genomic: GGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATGgtatggttcc ... gatatattagGGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAA
EST: GATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATG GGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACEST: gi|254348008|gb|GR854257.1|GR854257
genomic: GATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATGgtatggttcc ... gatatattagGGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCAC
EST: GATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATG GGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAA
genomic: GATGGTCACCACGGCTATAGTGTGCGCCCTCGTTCTGGGAATTTTGTATGgtatggttcc ... gatatattagGGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAA
atatgagctttaaactgtgtttgtttatgcttctattccatgattgatatattagGGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAACTTCATTTCCTAGCACATGGACATTCAGTAGTGGTCAACCTTGTATTGG
gattgat putative branch site (score: 4)
atgattgatatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccacctacaatcttgagtaaatacgtcaaatctgatgtggtttaatatgagctttaaactgtgtttgtttatgcttctattccatgattgatatattagGGCTGGTTGGTAAGGTGGACTTTACTATTAGGCATCTCTCTTCATCCACAACTTCATTTCCTAGCACATGGACATTCAGTAGTGGTCAACCTTGTATTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tccacct
- - - - - - - - - - - - - - - - - gatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt