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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattatagtttctgcattatgcatttatgcttaagttaacctattacagtttctgcattatgcatttatgcttaagtaattcttttaaatttatcccccttttgattcatattttaattttaatgattttttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG

Basic information

species Glycine max
transcript GLYMA07G15960.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15960.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv08s0007g00530.t01 (Vitis vinifera), 3'ss of exon 2
gtactattatagtttctgcattatgcatttatgcttaagttaacctattacagtttctgcattatgcatttatgcttaagtaattcttttaaatttatcccccttttgattcatattttaattttaatgattttttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
                                               | ||   ||    ||  ||  |||| | |||   ||||  | |   |  ||    ||||||  | || ||  || |||      ||||| || ||||||||||||||||||||| || |||||||||||||| |
----------------------------------------------gtaactacttagttatc-tgattttaggattatagaatttctgttg-tccatgtttcttttgccttatgttgaaagttt----tcttttttatgttagGTTGACTGGATTGGGCAAAAGAATCAAATAGATGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4313549|gb|AI460668.1|AI460668
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|8285026|gb|BE022585.1|BE022585
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|192323796|gb|FK015607.1|FK015607
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|193713458|gb|FK654485.1|FK654485
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAA-TCAAATAGATGTCG
EST: gi|193519195|gb|FK474960.1|FK474960
EST:     AGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|207686505|gb|GD669305.1|GD669305
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|193410230|gb|FK377141.1|FK377141
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|6095017|gb|AW119684.1|AW119684
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|31473809|gb|CD415837.1|CD415837
EST:     AAGGACNAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGNCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|193316371|gb|FK282731.1|FK282731
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAAGAAAAAATCAAATAGA
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCA-GAAAAA-TCAAATAGA
EST: gi|15202882|gb|BI425650.1|BI425650
EST:     AAGGACGAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGT
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGT
EST: gi|120530205|gb|EH258339.1|EH258339
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|192305319|gb|FG994015.1|FG994015
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|209706218|gb|BW680909.1|BW680909
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|31475468|gb|CD417496.1|CD417496
EST:     AAGGACNAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|15288058|gb|BI471949.1|BI471949
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|208257380|gb|GE056235.1|GE056235
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|20207666|gb|BQ133755.1|BQ133755
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|15204650|gb|BI427418.1|BI427418
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|15204560|gb|BI427328.1|BI427328
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|208327992|gb|GE119868.1|GE119868
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|193483298|gb|FK451085.1|FK451085
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAA
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAA
EST: gi|58016121|gb|CX702863.1|CX702863
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|192333007|gb|FK024656.1|FK024656
EST:     TTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: TTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|209725254|gb|BW672729.1|BW672729
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAGCAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|193320393|gb|FK286432.1|FK286432
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTAGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
EST: gi|193574114|gb|FK528802.1|FK528802
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAA-TCAAATAGATGTCG
EST: gi|209710151|gb|BW658900.1|BW658900
EST:     AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAG                         GTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
genomic: AAGGACAAAGACCAGAGTTCTATTTTGAGGATGGGGCATATCCTGAACAGgtactattat ... ttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatttatcccccttttgattcatattttaattttaatgattttttcatattagGTTGACTGGATTGGGCAGAAAAATCAAATAGATGTCG
                                ttttaat  putative branch site (score: 3)
                                         ttttttcat  putative PPT
              ttttgattcatatttt  TA-rich tract