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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttaatcgattcattcttatcttgtgttgtaataactaatttcctttcctttattgcttgattgatgaattgaattttacttttcattttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG

Basic information

species Glycine max
transcript GLYMA07G15170.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208332905|gb|GE131466.1|GE131466
EST:     ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAA                         GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
genomic: ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAAgtaagtgtta ... attttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
EST: gi|213598739|gb|DB956636.1|DB956636
EST:     ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAA                         GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCANAAG
genomic: ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAAgtaagtgtta ... attttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
EST: gi|17023871|gb|BM094905.1|BM094905
EST:     ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAA                         GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
genomic: ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAAgtaagtgtta ... attttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
EST: gi|151398093|gb|EV267971.1|EV267971
EST:     ACATACCCTAATCCTTTGCAAGACGACCCTGCTTATTCAGTTGTTAA                         GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
genomic: ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAAgtaagtgtta ... attttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
EST: gi|151396687|gb|EV266560.1|EV266560
EST:     ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAA                         GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
genomic: ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAAgtaagtgtta ... attttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
EST: gi|209711853|gb|BW674115.1|BW674115
EST:     ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAA                         GCAATATTTTGTGCATGTTGATGACAGCGTTCCTCANAAG
genomic: ACATACCCTAATCCTTTGCAAGACAACCCTGCTTATTCAGTTGTTAAgtaagtgtta ... attttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctttcctttattgcttgattgatgaattgaattttacttttcattttgccagGCAATATTTTGTGCATGTTGATGACAGCGTTCCTCAAAAG
                   gattgat  putative branch site (score: 4)
                                  ttttacttttcatttt  putative PPT
                           aattgaattttacttt  TA-rich tract