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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatacacgctctttcttcaatgtaatctaaaaataattgttgtcctatattgtttgttgttagtgattttgatgtcaattgtgtttttagtcgatgttgaattgtatgttgtttttctgatttgggtgtggttaaattgggcgtttattttttcttagGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG

Basic information

species Glycine max
transcript GLYMA07G14870.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G14870.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os10g41960.1 (Oryza sativa), 3'ss of exon 2
gtatacacgctctttcttcaatgtaatctaaaaataattgttgtcctatattgtttgttgttagtgattttgatgtcaattgtgtttttagtcgatgttgaattgtatgttgtttttctgatttgggtgtggttaaattgggcgtttattttttcttagGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG
                                                 || |    |||  |  || | ||  |    ||  |||||||     |||| | || || ||   |  |  | |||  || ||  | | || |   || |  || | | ||||||||||||||||||  || |||||  ||||||||||  | |||  | | ||||| ||||| || | ||||||||||||||||||||  | |||||| |
------------------------------------------------aataggaaattg--aacgactctgtcggatgtttcgttttta-----tgttcatttttaagtc--tagtagggtttaagtttgtattactttgt--ttgacattatgtcagGAAGCTGAGCTTGCTAGGGAAAAGACAAATGGGTACAAGCTCGACAAGTCTCACATCTTTGCAGTTAACATGTTTGATGACTTTGACAAGTACATGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgttgtttttctgatttgggtgtggttaaattgggcgtttattttttcttagGAAGCTGAGCTTGCTAAAGAGAAGACTCATGGGTACAAATTGGACCGGGCACACATATTTGCCGTGAGCATGTTTGATGACTTTGACAGATTCATGAAGG
           ttctgat  putative branch site (score: 3)
                                      cgtttattttttctt  putative PPT
                                        tttattttttctta  TA-rich tract