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...atgttcactcgctaactttttatgattgaaaaactgctaagttttcttactgctactgcatttttctgttttaatactaaatatctgattcatatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGACCTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGAATGGGGG
species | Glycine max |
transcript | GLYMA07G14540.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|209709339|gb|BW678883.1|BW678883
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|254341868|gb|GR853005.1|GR853005
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTGGGTGATCCTGAGAAGAAAEST: gi|193432506|gb|FK398238.1|FK398238
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|208239317|gb|GE037227.1|GE037227
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGEST: gi|207801424|gb|GD775510.1|GD775510
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTG
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAEST: gi|120491272|gb|EH219439.1|EH219439
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAA
EST: TCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|193613961|gb|FK562717.1|FK562717
genomic: TCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCGGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTTAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|209702366|gb|BW656341.1|BW656341
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|193334280|gb|FK299232.1|FK299232
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|18040211|gb|BM308505.1|BM308505
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|298172387|gb|HO019427.1|HO019427
genomic: GAAAGGCTGCTATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: GATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAEST: gi|193647664|gb|FK588019.1|FK588019
genomic: GATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
EST: ATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAG TTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
genomic: ATGAAGAACCATCCAGATAAGGGAGGAGATCCTGAAAAGgtaagactca ... catatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAA
cttactgctactgcatttttctgttttaatactaaatatctgattcatatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGACCTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGAATGGGGG
ttttaatactaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttcactcgctaactttttatgattgaaaaactgctaagttttcttactgctactgcatttttctgttttaatactaaatatctgattcatatatcagTTCAAGGAGTTAGGTCAAGCATATGAAGTTTTAAGTGATCCTGAGAAGAAAGACCTGTATGACCAGTATGGTGAAGATGCCCTTAAAGAAGGAATGGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA