1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtgttacaaatataacacttaacacatcaagcctttgctcaactattattgcattcaagaggtaatattgaatatcttgattgttgcttgcacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAG
species | Glycine max |
transcript | GLYMA07G10930.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACEST: gi|9986003|gb|BE660009.1|BE660009
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
EST: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACEST: gi|298192133|gb|HO036215.1|HO036215
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
EST: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACEST: gi|298173103|gb|HO020087.1|HO020087
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
EST: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAG ATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
genomic: CTAGATTCTATCGCCATGTTCCACATCCTTCCCCTGATGGTCTTGCTGAGgttggttctt ... cacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACAC
ttattgcattcaagaggtaatattgaatatcttgattgttgcttgcacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAG
tcttgat putative branch site (score: 4)
taatattgaatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttacaaatataacacttaacacatcaagcctttgctcaactattattgcattcaagaggtaatattgaatatcttgattgttgcttgcacattgaagATAATGATACTTCAAGGAAGAATAATGATGGGGGGACGATTTGATTCACACGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - -aaatataa
- - - - - - - - - - aacacat
- - - - - - - - - - - - - - - -cctttgc
- - - - - - - - - - - - - - - - - - - - - - - - - gcattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct